CRISPRone

CRISPRone report for GCA_903181475.1_NZ_Clostridioides_difficile_9C4_BL_hyb

♦ Seq 1: CAEUHM010000001.1 Clostridioides difficile isolate NZ_Clostridioides_difficile_9C4_BL_hyb genome assembly, contig: gnlWUSMEFCGSSBPEDI26870FC3_1, whole genome shotgun sequence

⇒Summary: seq-len = 4132847 bp; # of CRISPR array = 7; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1235281-1235376 bp 2 Locus 2: 1447994-1448155 bp 3 Locus 3: 1557414-1558034 bp 4 Locus 4: 1657432-1660487 bp 5 Locus 5: 1800067-1800487 bp 6 Locus 6: 2566287-2577245 bp 7 Locus 7: 2628455-2638178 bp 8 Locus 8: 2717965-2718190 bp Zoom in on locus 1 x2 Zoom in on locus 2 x3 Zoom in on locus 3 x10 Zoom in on locus 4 x4 x3 Zoom in on locus 5 x7 Zoom in on locus 6 Zoom in on locus 7 Zoom in on locus 8 x4 CRISPR array Location: 1235281-1235376 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1235281-1235376 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1447994-1448155 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1447994-1448155 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 1557414-1558034 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1557414-1558034 bp Num of repeats: 10 Spacers: s4-s12 CRISPR array Location: 1657432-1657659 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1657432-1657659 bp Num of repeats: 4 Spacers: s13-s15 CRISPR array Location: 1660326-1660487 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1660326-1660487 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 1800067-1800487 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 1800067-1800487 bp Num of repeats: 7 Spacers: s18-s23 Gene: cd06127:DEDDh Type: Type-I Location: 2566287-2566793 bp Gene: unk Type: unknown Location: 2566952-2567620 bp Gene: unk Type: unknown Location: 2568033-2568539 bp Gene: cd06127:DEDDh Type: Type-I Location: 2568911-2569948 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2576760-2577245 bp Gene: cd09641:cas3HD Type: Type-I Location: 2628455-2630863 bp Gene: cd09693:cas5 Type: Type-I Location: 2630890-2631687 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2631703-2632716 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2632736-2634202 bp Gene: pfam01881:cas6 Type: other Location: 2634207-2634944 bp Gene: unk Type: unknown Location: 2635258-2635716 bp Gene: cas14:cas14 Type: Type-V Location: 2635744-2636916 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2637069-2638178 bp CRISPR array Location: 2717965-2718190 bp Num of repeats: 4 Spacers: s24-s26 CRISPR array Location: 2717965-2718190 bp Num of repeats: 4 Spacers: s24-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1235281-1235376 bp]: array | spacers
           [Locus range 1447994-1448155 bp]: array | spacers
           [Locus range 1557414-1558034 bp]: array | spacers
           [Locus range 1657432-1657659 bp]: array | spacers
           [Locus range 1660326-1660487 bp]: array | spacers
           [Locus range 1800067-1800487 bp]: array | spacers
           [Locus range 2717965-2718190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)