CRISPRone

CRISPRone report for GCA_000014645.1_ASM1464v1

♦ Seq 1: CP000439.1 Francisella tularensis subsp. novicida U112, complete genome

⇒Summary: seq-len = 1910031 bp; # of CRISPR array = 2; # of cas gene = 9  (type I, II, V) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 810052-818453 bp 2 Locus 2: 1470396-1477344 bp Zoom in on locus 1 x14 Zoom in on locus 2 x10 Gene: ABK89648.1:cd09704:cas9 Type: Subtype-II-B Location: 810052-814941 bp Gene: ABK89649.1:pfam01867:cas1 Type: Subtype-II-B Location: 814922-815878 bp Gene: ABK89650.1:pfam09827:cas2 Type: Subtype-II-B Location: 816036-816329 bp Gene: ABK89651.1:cd09637:cas4 Type: Subtype-II-B Location: 816310-816900 bp antiRepeat Location: 817113-817149 bp Strand: + Match length: 21 bp Mismatch: 16 bp CRISPR array Location: 817260-818233 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 817260-818233 bp Num of repeats: 14 Spacers: s1-s13 antiRepeat Location: 818417-818453 bp Strand: + Match length: 24 bp Mismatch: 13 bp Gene: ABK90263.1:COG0640:csa3 Type: Subtype-I-A Location: 1470396-1470698 bp CRISPR array Location: 1470758-1471379 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 1470758-1471379 bp Num of repeats: 10 Spacers: s14-s22 Gene: ABK90264.1:pfam09827:cas2 Type: universal Location: 1471519-1471791 bp Gene: ABK90265.1:cd09634:cas1 Type: universal Location: 1471772-1472776 bp Gene: ABK90266.1:cd09637:cas4 Type: other Location: 1472780-1473271 bp Gene: ABK90267.1:mkCas0192:cas12a Type: Subtype-V-A Location: 1473442-1477344 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 817260-818233 bp]: array | spacers
           [Locus range 1470758-1471379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)