CRISPRone

CRISPRone report for GCA_000019425.1_ASM1942v1

♦ Seq 1: CP000948.1 Escherichia coli str. K12 substr. DH10B, complete genome

⇒Summary: seq-len = 4686137 bp; # of CRISPR array = 2; # of cas gene = 13  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1808985-1822298 bp 2 Locus 2: 2169821-2173215 bp 3 Locus 3: 2968265-2977783 bp 4 Locus 4: 2994578-2994971 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x13 Zoom in on locus 4 x7 Gene: ACB02848.1:COG0640:csa3 Type: Subtype-I-A Location: 1808985-1809419 bp Gene: ACB02857.1:cd06127:DEDDh Type: Type-I Location: 1816942-1817589 bp Gene: ACB02858.1:cd09639:cas3 Type: Type-I Location: 1817682-1822298 bp Gene: ACB03181.1:cd09669:cas8e Type: Subtype-I-E Location: 2169821-2170294 bp Gene: ACB03182.1:unk Type: unknown Location: 2170413-2171579 bp Gene: ACB03183.1:cd06127:DEDDh Type: Type-I Location: 2171788-2173215 bp CRISPR array Location: 2968265-2969027 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2968265-2969027 bp Num of repeats: 13 Spacers: s1-s12 Gene: ACB03871.1:cd09648:cas2 Type: universal Location: 2969133-2969417 bp Gene: ACB03872.1:cd09719:cas1 Type: universal Location: 2969419-2970336 bp Gene: ACB03873.1:cd09664:cas6e Type: Subtype-I-E Location: 2970352-2970951 bp Gene: ACB03874.1:cd09645:cas5 Type: Subtype-I-E Location: 2970938-2971612 bp Gene: ACB03875.1:cd09646:cas7 Type: Subtype-I-E Location: 2971615-2972706 bp Gene: ACB03876.1:cd09670:cse2gr11 Type: Subtype-I-E Location: 2972719-2973201 bp Gene: ACB03877.1:cd09669:cas8e Type: Subtype-I-E Location: 2973194-2974702 bp Gene: ACB03878.1:COG1203:cas3 Type: Type-I Location: 2975117-2977783 bp CRISPR array Location: 2994578-2994971 bp Num of repeats: 7 Spacers: s13-s18 CRISPR array Location: 2994578-2994971 bp Num of repeats: 7 Spacers: s13-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2968265-2969027 bp]: array | spacers
           [Locus range 2994578-2994971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)