CRISPRone

CRISPRone report for GCA_000091545.1_ASM9154v1

♦ Seq 1: AP008227.1 Thermus thermophilus HB8 plasmid pTT27 DNA, complete sequence

⇒Summary: seq-len = 256992 bp; # of CRISPR array = 8; # of cas gene = 33  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18044-18306 bp 2 Locus 2: 131246-157896 bp 3 Locus 3: 189507-202078 bp 4 Locus 4: 227324-238867 bp Zoom in on locus 1 x4 Zoom in on locus 2 x3 x13 x10 x13 Zoom in on locus 3 x24 x21 Zoom in on locus 4 x13 CRISPR array Location: 18044-18306 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18044-18306 bp Num of repeats: 4 Spacers: s1-s3 Gene: BAD71940.1:cd09702:csx1 Type: Type-III Location: 131246-132451 bp Gene: BAD71941.1:cd09634:cas1 Type: universal Location: 132455-133402 bp CRISPR array Location: 133766-133950 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 133766-133950 bp Num of repeats: 3 Spacers: s4-s5 Gene: BAD71942.1:unk Type: unknown Location: 133966-134919 bp CRISPR array Location: 135156-136099 bp Num of repeats: 13 Spacers: s6-s17 CRISPR array Location: 135156-136099 bp Num of repeats: 13 Spacers: s6-s17 Gene: BAD71943.1:cd09680:cas10 Type: Type-III Location: 136457-138874 bp Gene: BAD71944.1:cd09647:csm2gr11 Type: Subtype-III-A Location: 138875-139279 bp Gene: BAD71945.1:cd09684:csm3gr7 Type: Type-III Location: 139291-140016 bp Gene: BAD71946.1:pfam03787:csm3gr7 Type: Type-III Location: 140026-140901 bp Gene: BAD71947.1:pfam03787:csm3gr7 Type: Type-III Location: 140859-142052 bp Gene: BAD71948.1:cd09747:csx1 Type: Type-III Location: 142063-143457 bp Gene: BAD71949.1:unk Type: unknown Location: 143528-143986 bp CRISPR array Location: 144129-144842 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 144129-144842 bp Num of repeats: 10 Spacers: s18-s26 Gene: BAD71950.1:unk Type: unknown Location: 144854-145807 bp CRISPR array Location: 146042-146983 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 146042-146983 bp Num of repeats: 13 Spacers: s27-s38 Gene: BAD71951.1:pfam09002:csx1 Type: Type-III Location: 147020-148930 bp Gene: BAD71956.1:cls000742:cas10 Type: Type-III Location: 151610-153364 bp Gene: BAD71957.1:cd09748:cmr3gr5 Type: Subtype-III-B Location: 153354-154439 bp Gene: BAD71958.1:pfam03787:csm3gr7 Type: Type-III Location: 154436-155623 bp Gene: BAD71959.1:cd09682:cmr4gr7 Type: Subtype-III-B Location: 155639-156499 bp Gene: BAD71960.1:cd09749:cmr5gr11 Type: Subtype-III-B Location: 156503-156847 bp Gene: BAD71961.1:cd09726:csm3gr7 Type: Subtype-III-D Location: 156850-157896 bp CRISPR array Location: 189507-190947 bp Num of repeats: 24 Spacers: s39-s61 CRISPR array Location: 189507-190947 bp Num of repeats: 24 Spacers: s39-s61 Gene: BAD71982.1:pfam13280:WYL Type: other Location: 191138-192127 bp Gene: BAD71983.1:cd09641:cas3HD Type: Type-I Location: 192124-194886 bp Gene: BAD71984.1:cd09669:cas8e Type: Subtype-I-E Location: 194936-196444 bp Gene: BAD71985.1:cd09670:cse2gr11 Type: Subtype-I-E Location: 196441-196950 bp Gene: BAD71986.1:pfam09344:cas7 Type: Subtype-I-E Location: 196947-198062 bp Gene: BAD71987.1:cd09756:cas5 Type: Subtype-I-E Location: 198064-198810 bp Gene: BAD71988.1:pfam08798:cas6e Type: other Location: 198797-199432 bp Gene: BAD71989.1:cd09719:cas1 Type: universal Location: 199442-200419 bp Gene: BAD71990.1:pfam09707:cas2 Type: universal Location: 200376-200750 bp CRISPR array Location: 200811-202078 bp Num of repeats: 21 Spacers: s62-s81 CRISPR array Location: 200811-202078 bp Num of repeats: 21 Spacers: s62-s81 CRISPR array Location: 227324-228237 bp Num of repeats: 13 Spacers: s82-s93 CRISPR array Location: 227324-228237 bp Num of repeats: 13 Spacers: s82-s93 Gene: BAD72019.1:cd09725:cas2 Type: universal Location: 228477-228761 bp Gene: BAD72020.1:cd09634:cas1 Type: universal Location: 228758-229756 bp Gene: BAD72021.1:COG1468:cas4 Type: other Location: 229726-230310 bp Gene: BAD72022.1:pfam13280:WYL Type: other Location: 230466-231659 bp Gene: BAD72023.1:mkCas0131:cas8b5 Type: Subtype-I-B Location: 231677-233977 bp Gene: BAD72024.1:cls000038:cas7 Type: Subtype-I-B Location: 233979-234860 bp Gene: BAD72025.1:cls000047:cas5 Type: Subtype-I-B Location: 234739-235653 bp Gene: BAD72026.1:cd09639:cas3 Type: Type-I Location: 235620-238073 bp Gene: BAD72027.1:cd09652:cas6 Type: other Location: 238073-238867 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 18044-18306 bp]: array | spacers
           [Locus range 133766-133950 bp]: array | spacers
           [Locus range 135156-136099 bp]: array | spacers
           [Locus range 144129-144842 bp]: array | spacers
           [Locus range 146042-146983 bp]: array | spacers
           [Locus range 189507-190947 bp]: array | spacers
           [Locus range 200811-202078 bp]: array | spacers
           [Locus range 227324-228237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AP008226.1 Thermus thermophilus HB8 genomic DNA, complete genome

⇒Summary: seq-len = 1849742 bp; # of CRISPR array = 2; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79613-80571 bp 2 Locus 2: 872101-874734 bp Zoom in on locus 1 Zoom in on locus 2 x15 x5 Gene: BAD69901.1:pfam10040:cas6 Type: other Location: 79613-80332 bp Gene: BAD69902.1:mkCas0081:cas2 Type: universal Location: 80335-80571 bp CRISPR array Location: 872101-873199 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 872101-873199 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 874397-874734 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 874397-874734 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 872101-873199 bp]: array | spacers
           [Locus range 874397-874734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)