CRISPRone

CRISPRone report for GCA_002007885.1_ASM200788v1

♦ Seq 1: CP019870.1 Clostridioides difficile strain BR81, complete genome

⇒Summary: seq-len = 4124384 bp; # of CRISPR array = 9; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 742560-753834 bp 2 Locus 2: 1257179-1257737 bp 3 Locus 3: 1331004-1338869 bp 4 Locus 4: 1500847-1501862 bp 5 Locus 5: 1851001-1852213 bp 6 Locus 6: 1903125-1903285 bp 7 Locus 7: 2226341-2227556 bp 8 Locus 8: 2402960-2404049 bp 9 Locus 9: 2514374-2514668 bp 10 Locus 10: 2722783-2723141 bp Zoom in on locus 1 x27 Zoom in on locus 2 x9 Zoom in on locus 3 Zoom in on locus 4 x16 Zoom in on locus 5 x19 Zoom in on locus 6 x3 Zoom in on locus 7 x19 Zoom in on locus 8 x17 Zoom in on locus 9 x5 Zoom in on locus 10 x6 Gene: pfam13280:WYL Type: other Location: 742560-743447 bp Gene: pfam01881:cas6 Type: other Location: 743525-744262 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 744268-746145 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 746147-747061 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 747063-747764 bp Gene: COG1203:cas3 Type: Type-I Location: 747775-750096 bp Gene: pfam01930:cas4 Type: Type-I Location: 750111-750662 bp Gene: cd09722:cas1 Type: universal Location: 750665-751645 bp Gene: cd09725:cas2 Type: universal Location: 751648-751914 bp CRISPR array Location: 752098-753834 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 752098-753834 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 1257179-1257737 bp Num of repeats: 9 Spacers: s27-s34 CRISPR array Location: 1257179-1257737 bp Num of repeats: 9 Spacers: s27-s34 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1331004-1332113 bp Gene: pfam01881:cas6 Type: other Location: 1332371-1333108 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1333113-1334588 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1334608-1335621 bp Gene: cd09693:cas5 Type: Type-I Location: 1335637-1336434 bp Gene: cd09641:cas3HD Type: Type-I Location: 1336461-1338869 bp CRISPR array Location: 1500847-1501862 bp Num of repeats: 16 Spacers: s35-s49 CRISPR array Location: 1500847-1501862 bp Num of repeats: 16 Spacers: s35-s49 CRISPR array Location: 1851001-1852213 bp Num of repeats: 19 Spacers: s50-s67 CRISPR array Location: 1851001-1852213 bp Num of repeats: 19 Spacers: s50-s67 CRISPR array Location: 1903125-1903285 bp Num of repeats: 3 Spacers: s68-s69 CRISPR array Location: 1903125-1903285 bp Num of repeats: 3 Spacers: s68-s69 CRISPR array Location: 2226341-2227556 bp Num of repeats: 19 Spacers: s70-s87 CRISPR array Location: 2226341-2227556 bp Num of repeats: 19 Spacers: s70-s87 CRISPR array Location: 2402960-2404049 bp Num of repeats: 17 Spacers: s88-s103 CRISPR array Location: 2402960-2404049 bp Num of repeats: 17 Spacers: s88-s103 CRISPR array Location: 2514374-2514668 bp Num of repeats: 5 Spacers: s104-s107 CRISPR array Location: 2514374-2514668 bp Num of repeats: 5 Spacers: s104-s107 CRISPR array Location: 2722783-2723141 bp Num of repeats: 6 Spacers: s108-s112 CRISPR array Location: 2722783-2723141 bp Num of repeats: 6 Spacers: s108-s112 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 752098-753834 bp]: array | spacers
           [Locus range 1257179-1257737 bp]: array | spacers
           [Locus range 1500847-1501862 bp]: array | spacers
           [Locus range 1851001-1852213 bp]: array | spacers
           [Locus range 1903125-1903285 bp]: array | spacers
           [Locus range 2226341-2227556 bp]: array | spacers
           [Locus range 2402960-2404049 bp]: array | spacers
           [Locus range 2514374-2514668 bp]: array | spacers
           [Locus range 2722783-2723141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)