CRISPRone

CRISPRone report for GCA_004318285.1_ASM431828v1

♦ Seq 1: BIVR01000009.1 Clostridioides difficile FD253 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 77640 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18014-18175 bp Zoom in on locus 1 x3 CRISPR array Location: 18014-18175 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18014-18175 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18014-18175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIVR01000004.1 Clostridioides difficile FD253 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 123682 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95332-106289 bp Zoom in on locus 1 Gene: cd06127:DEDDh Type: Type-I Location: 95332-95838 bp Gene: unk Type: unknown Location: 95997-96665 bp Gene: unk Type: unknown Location: 97078-97584 bp Gene: cd06127:DEDDh Type: Type-I Location: 97956-98993 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105804-106289 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIVR01000059.1 Clostridioides difficile FD253 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 23639 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5343-5704 bp Zoom in on locus 1 x6 CRISPR array Location: 5343-5704 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5343-5704 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5343-5704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIVR01000076.1 Clostridioides difficile FD253 DNA, sequence076, whole genome shotgun sequence

⇒Summary: seq-len = 16754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5077-5172 bp Zoom in on locus 1 x2 CRISPR array Location: 5077-5172 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5077-5172 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5077-5172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIVR01000099.1 Clostridioides difficile FD253 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 10462 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3907-6961 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 3907-4067 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3907-4067 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6735-6961 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 6735-6961 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3907-4067 bp]: array | spacers
           [Locus range 6735-6961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIVR01000109.1 Clostridioides difficile FD253 DNA, sequence109, whole genome shotgun sequence

⇒Summary: seq-len = 7045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3577-3999 bp Zoom in on locus 1 x7 CRISPR array Location: 3577-3999 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3577-3999 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3577-3999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIVR01000001.1 Clostridioides difficile FD253 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 152416 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147291-147648 bp Zoom in on locus 1 x6 CRISPR array Location: 147291-147648 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 147291-147648 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147291-147648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIVR01000007.1 Clostridioides difficile FD253 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 94696 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51815-61538 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51815-52924 bp Gene: cas14:cas14 Type: Type-V Location: 53077-54249 bp Gene: unk Type: unknown Location: 54277-54735 bp Gene: pfam01881:cas6 Type: other Location: 55049-55786 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 55791-57257 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 57277-58290 bp Gene: cd09693:cas5 Type: Type-I Location: 58306-59103 bp Gene: cd09641:cas3HD Type: Type-I Location: 59130-61538 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)