CRISPRone

CRISPRone report for GCA_005944305.1_ASM594430v1

♦ Seq 1: CP040724.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM chromosome, complete genome

⇒Summary: seq-len = 5433031 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1838560-1849691 bp Zoom in on locus 1 x43 CRISPR array Location: 1838560-1841151 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 1838560-1841151 bp Num of repeats: 43 Spacers: s1-s42 Gene: pfam09707:cas2 Type: universal Location: 1841248-1841541 bp Gene: cd09719:cas1 Type: universal Location: 1841541-1842461 bp Gene: cd09664:cas6e Type: Subtype-I-E Location: 1842458-1843108 bp Gene: cd09645:cas5 Type: Subtype-I-E Location: 1843090-1843836 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1843847-1844902 bp Gene: pfam09485:cse2gr11 Type: Subtype-I-E Location: 1844921-1845463 bp Gene: cd09669:cas8e Type: Subtype-I-E Location: 1845460-1847016 bp Gene: COG1203:cas3 Type: Type-I Location: 1847028-1849691 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1838560-1841151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CP040726.1 Klebsiella pneumoniae strain KpvST147B_SE1_1_NDM plasmid pKpvST147B_virulence, complete sequence

⇒Summary: seq-len = 339117 bp; # of CRISPR array = 2; # of cas gene = 5  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 297635-306356 bp Zoom in on locus 1 x3 x12 Gene: pfam00078:RT Type: other Location: 297635-299122 bp CRISPR array Location: 299880-300030 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 299880-300030 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 300123-300822 bp Num of repeats: 12 Spacers: s3-s13 CRISPR array Location: 300123-300822 bp Num of repeats: 12 Spacers: s3-s13 Gene: pfam03787:csm3gr7 Type: Type-III Location: 300888-301919 bp Gene: unk Type: unknown Location: 301924-302631 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 302625-304499 bp Gene: cd09727:cas6e Type: Subtype-I-E Location: 304502-305068 bp Gene: unk Type: unknown Location: 305071-305862 bp Gene: mkCas0115:csx3 Type: other Location: 305925-306356 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 299880-300030 bp]: array | spacers
           [Locus range 300123-300822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)