CRISPRone

CRISPRone report for GCA_013305645.1_ASM1330564v1

♦ Seq 1: CP045552.1 Pseudomonas aeruginosa strain YT12746 chromosome, complete genome

⇒Summary: seq-len = 6870662 bp; # of CRISPR array = 5; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3168652-3180283 bp 2 Locus 2: 4586534-4597413 bp Zoom in on locus 1 x19 x27 Zoom in on locus 2 x12 x2 x13 CRISPR array Location: 3168652-3169761 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3168652-3169761 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 3169945-3170508 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 3170512-3171540 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3171551-3172534 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3172521-3173822 bp Gene: COG1203:cas3 Type: Type-I Location: 3174233-3177463 bp Gene: cd09718:cas1 Type: universal Location: 3177460-3178434 bp CRISPR array Location: 3178695-3180283 bp Num of repeats: 27 Spacers: s19-s44 CRISPR array Location: 3178695-3180283 bp Num of repeats: 27 Spacers: s19-s44 CRISPR array Location: 4586534-4587233 bp Num of repeats: 12 Spacers: s45-s55 CRISPR array Location: 4586534-4587233 bp Num of repeats: 12 Spacers: s45-s55 Gene: pfam09707:cas2 Type: universal Location: 4587298-4587597 bp Gene: cd09719:cas1 Type: universal Location: 4587594-4588484 bp Gene: pfam08798:cas6e Type: other Location: 4588511-4589050 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 4589097-4589759 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4589761-4590903 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 4590913-4591443 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 4591440-4593008 bp Gene: cd09641:cas3HD Type: Type-I Location: 4593011-4595692 bp CRISPR array Location: 4596467-4596556 bp Num of repeats: 2 Spacers: s56-s56 CRISPR array Location: 4596467-4596556 bp Num of repeats: 2 Spacers: s56-s56 CRISPR array Location: 4596651-4597413 bp Num of repeats: 13 Spacers: s57-s68 CRISPR array Location: 4596651-4597413 bp Num of repeats: 13 Spacers: s57-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3168652-3169761 bp]: array | spacers
           [Locus range 3178695-3180283 bp]: array | spacers
           [Locus range 4586534-4587233 bp]: array | spacers
           [Locus range 4596467-4596556 bp]: array | spacers
           [Locus range 4596651-4597413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)