| Download Link | Description |
|---|---|
| genome2sample2Proteins2Nspecs_dic.json | JSON containing number of PSMs for each protein in each sample for each genome. |
| annotations.tar.gz | KEGG and COG annotations data for the predicted proteins. |
| orf_annotations.tar.gz | Annotations for the missed ORFs. |
| study_files.csv | List of files used in this study and corresponding source ProteomeXchange ID. |
| networks.tar.gz | Protein co-occurrence modules (in Cytoscape format) |
| spectra.tar.gz | MSGF+ raw spectra data. |
| genome_to_taxonomy.csv | Taxonomic assignment of the genomes. |
| sample2study_dic.json | JSON containing the list of samples and the associated study. See https://omics.informatics.indiana.edu/GutBac/study/ for a full list of studies. |
| genome2sample2pointsNormalized_dic.json | JSON containing the normalized spectra counts for each genome in a given sample. |
Contact: yye@indiana.edu for questions about the paper or jcandera@indiana.edu for website issues