Template:  C3073331 strand: - 4834-4949 ref: 4835-4950
Variable:  C3073331 strand: - 5483-5598 alnlen 115 mutations 12 involve-A 12 involve-T 0

4949       CGTTTGCCGATCTGCGGGGGCAACTGGAACAACACTTCCAATGCTGGCGTGTTCAACGTGAACCTGAACAACCCTCGGACTAACGCCAACGGCAACATCGGTTTCCGCTCCGCTT (revcomp)
           ::::::::: :::::::::::  :::::::: : :::::::::::::::::::: :::::::::::: : :::::::::::::::::  ::::: : ::::::::::::::::::
5598       CGTTTGCCGCTCTGCGGGGGCCGCTGGAACAGCGCTTCCAATGCTGGCGTGTTCTACGTGAACCTGAGCGACCCTCGGACTAACGCCGGCGGCAGCCTCGGTTTCCGCTCCGCTT (revcomp)