Template:  C3236803 strand: - 6414-6525 ref: 6415-6526
Variable:  C3236803 strand: - 7041-7152 alnlen 111 mutations 12 involve-A 12 involve-T 0

6525       AGCGTTCTACTCTGGTGGCAATTGGAACAACGGTGCTAATGCGGGTCTGTTCGCCTTGAACGGCAACAATCCCCGCTCGAACTCGAACTGGAACCTCGGCTTCCGCTCCGC (revcomp)
           :::::::: ::::::::::  :::: ::::::::::: ::::::::::::::::::::  ::::: :::::::::::::  ::::::::::  ::::::::::::::::::
7152       AGCGTTCTTCTCTGGTGGCGGTTGGTACAACGGTGCTGATGCGGGTCTGTTCGCCTTGGGCGGCAGCAATCCCCGCTCGCTCTCGAACTGGGGCCTCGGCTTCCGCTCCGC (revcomp)