Template:  C5527333 strand: - 1015-1126 ref: 1012-1127
Variable:  C5527333 strand: - 1358-1469 alnlen 111 mutations 10 involve-A 10 involve-T 0

1126       TTGCCCTGTTCGGTGGCAACCGTGGCAACGGGTCGAAGTGCGGTTTGTCGTACTGGAATGTGAACAACCCTGCGACGAACGTGAACACGAACATCGTGGCGAGCCAATCTT (revcomp)
           :::::::::::::::::  ::::::::::::::::: ::::::::::::::::::: :::::::::::::::::::: :::::: :::: :: ::::::::::::  ::::
1469       TTGCCCTGTTCGGTGGCGTCCGTGGCAACGGGTCGAGGTGCGGTTTGTCGTACTGGGATGTGAACAACCCTGCGACGTACGTGAGCACGGACGTCGTGGCGAGCCTTTCTT (revcomp)