Template:  SRS013687_Baylor_scaffold_59360 strand: + 48505-48617 ref: 48505-48617
Variable:  SRS013687_Baylor_scaffold_59360 strand: + 47960-48072 alnlen 112 mutations 15 involve-A 15 involve-T 0

48505      GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::::::::::: ::::: :::::  ::::::::::::::::::: ::::: :: :: ::::::::::::::: ::::  : ::::::::: ::: : ::
47960      GGTGTCTTGTTCGGCGGTAATGCGTATAACGGCGCGCTTGCCGGGCTTTCGTACGCGTATACGCATTACTCGGCTACGAATACGACTGCGTCTGTCGGCTCTCGGCTTTGCT 
Template:  SRS013687_Baylor_scaffold_59360 strand: + 48541-48617 ref: 48505-48617
Variable:  SRS013687_Baylor_scaffold_59360 strand: + 9870-9946 alnlen 76 mutations 12 involve-A 12 involve-T 0

48541      AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::::::::  :::::::::: :::::::: :::::  ::::  : ::::::::: ::: : ::
9870       AATGCCGGGCTTTCGTACGCGCGTACGAATAACGCGGCTACGTATACGGCTGCGTCTTTCGGCTCTCGGCTTTGCT 
Template:  SRS013687_Baylor_scaffold_59360 strand: + 48543-48617 ref: 48505-48617
Variable:  SRS013687_Baylor_scaffold_59360 strand: + 12800-12874 alnlen 74 mutations 15 involve-A 14 involve-T 0

48543      TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::: :::: :: :  ::  ::::::::::  : :: :::::: ::::::::::: ::: : ::
12800      TGCCGGGCTTTCGTGCGCGTATGCTTATTGCACGGCTACGTCTGCGTATGCGACTATCGGCTCTCGGCTTTGCT