Template:  SRS014979_WUGC_scaffold_5470 strand: + 28641-28753 ref: 28641-28753
Variable:  SRS014979_WUGC_scaffold_5470 strand: + 28096-28208 alnlen 112 mutations 17 involve-A 17 involve-T 0

28641      GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::::::::::::::  : :::::: ::::::::::::::::::: ::::::::  : ::::::::  ::::  :::: :: ::::::::: ::: : ::
28096      GGTGTCTTGTTCGGCGGTAATGCGAATGCCGGCGCGACTGCCGGGCTTTCGTACGCGCATACGAATTTCGCGGCTACGTCTACGGCTGCGTATGTCGGCTCTCGGCTTTGCT 
Template:  SRS014979_WUGC_scaffold_5470 strand: + 28679-28753 ref: 28641-28753
Variable:  SRS014979_WUGC_scaffold_5470 strand: + 42935-43009 alnlen 74 mutations 11 involve-A 11 involve-T 0

28679      TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::::::  ::::: :::: :::::::: :: :::::::: :: ::::::::: ::: : ::
42935      TGCCGGGCTTTCGTACGCGGGTACGACTAACGCGGCTACGTATGCGAATGCGGATGTCGGCTCTCGGCTTTGCT 
Template:  SRS014979_WUGC_scaffold_5470 strand: + 28677-28753 ref: 28641-28753
Variable:  SRS014979_WUGC_scaffold_5470 strand: + 40005-40081 alnlen 76 mutations 14 involve-A 14 involve-T 0

28677      AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::::::::::::::::::: :: :: ::::: ::::: ::  ::::  ::::: : ::::::::: ::: : ::
40005      AATGCCGGGCTTTCGTACGCGTATGCGTATAACGCGGCTGCGGCTACGGGTGCGAGTCTCGGCTCTCGGCTTTGCT