Template:  SRS015217_WUGC_scaffold_19551 strand: + 40841-40951 ref: 40841-40951
Variable:  SRS015217_WUGC_scaffold_19551 strand: + 40138-40248 alnlen 110 mutations 10 involve-A 10 involve-T 0

40841      GCCTATCCGGGGTTCGAGTTTCAACAACACTTCCAACGGTGGTGCTGGTGCGCTGAACTTGAACAACCCCCGTTCTAACGTCAACAACAACGTTTCGTTCCGTTCCGCTT 
           :::: ::::::::::::::::: ::: :::::::: ::::::::::::::::::: ::::: ::::::::::::::  ::::::: ::: ::::::::::::::::::::
40138      GCCTCTCCGGGGTTCGAGTTTCTACAGCACTTCCAGCGGTGGTGCTGGTGCGCTGCACTTGGACAACCCCCGTTCTTTCGTCAACGACATCGTTTCGTTCCGTTCCGCTT 
Template:  SRS015217_WUGC_scaffold_19551 strand: + 40841-40951 ref: 40841-40951
Variable:  SRS015217_WUGC_scaffold_19551 strand: + 4554-4664 alnlen 110 mutations 11 involve-A 11 involve-T 0

40841      GCCTATCCGGGGTTCGAGTTTCAACAACACTTCCAACGGTGGTGCTGGTGCGCTGAACTTGAACAACCCCCGTTCTAACGTCAACAACAACGTTTCGTTCCGTTCCGCTT 
           :::: ::::::::::::::::: :: :::::::: ::::::::::::::::::::  :::: :: ::::::::::::::::: ::  :::::::::::::::::::::::
4554       GCCTCTCCGGGGTTCGAGTTTCCACCACACTTCCCACGGTGGTGCTGGTGCGCTGGGCTTGGACTACCCCCGTTCTAACGTCTACTTCAACGTTTCGTTCCGTTCCGCTT