Template: SRS016095_WUGC_scaffold_20077 strand: - 46342-46501 ref: 46341-46502 Variable: SRS016095_WUGC_scaffold_20077 strand: - 47736-47895 alnlen 159 mutations 18 involve-A 18 involve-T 0 46501 ACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp) :::::::::::::::::: :::::::::: : ::::: :::::::::::::::::::: :::::::: ::::: : ::::: :::: :::::::: ::::: ::::::::: :::: ::::::::::: ::::::::::::::::::::::::::: 47895 ACAATAACGGGCAGTTGAGCAACGTGGGCCTCTACGGCTACTATTGGTCGGGCTCGCCGTACGGTACGTTCGGGTCTTACCTGTGCTTCGACAATGGTTACGTGTACCCGGCGAGCAACTACAACCGCTCGTACGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp) Template: SRS016095_WUGC_scaffold_20077 strand: - 46404-46496 ref: 46341-46502 Variable: SRS016095_WUGC_scaffold_20077 strand: - 50825-50917 alnlen 92 mutations 20 involve-A 11 involve-T 1 46496 AACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG (revcomp) :: ::::::::: ::::::::::: :: ::::: ::::::::::::: :: :: ::: ::: : :::::: : :: ::::: :: ::: 50917 AATGGGCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG (revcomp)