Template:  SRS017521_Baylor_scaffold_45782 strand: - 22638-22787 ref: 22637-22787
Variable:  SRS017521_Baylor_scaffold_45782 strand: - 24031-24180 alnlen 149 mutations 21 involve-A 21 involve-T 0

22787      GCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp)
           ::::::: ::  :::::::  : ::::: :::::::::::::::::::::::::: ::  :::::::  ::::  ::::  :::::::::::::::::::::: ::: : :::::::::::  ::::::::::::::::::::::::::
24180      GCAGTTGTACGCCGTGGGCTTCTACGGCTACTATTGGTCGGGCTCGCCGAACGGTTCGCGCGGGTATTCCCTGTTCTTCGGCAATGGTAACGTGAACCCGGCGTACAGCGACAACCGCTCGCTCGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp)
Template:  SRS017521_Baylor_scaffold_45782 strand: - 22700-22787 ref: 22637-22787
Variable:  SRS017521_Baylor_scaffold_45782 strand: - 27120-27207 alnlen 87 mutations 19 involve-A 11 involve-T 1

22787      GCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG (revcomp)
           ::::::: ::::::::::: :: ::::: ::::::::::::: :: :: ::: :::  : ::::::   : :: :::::  :: :::
27207      GCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG (revcomp)