Template:  SRS017701_Baylor_scaffold_11281 strand: + 46753-46865 ref: 46753-46865
Variable:  SRS017701_Baylor_scaffold_11281 strand: + 46208-46320 alnlen 112 mutations 18 involve-A 18 involve-T 0

46753      GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::::::::::::::::  ::::  :::: :::::  :::::::::::::: :::: :::::  ::::::::::::: :: ::::::::  ::::::::::: ::: : ::
46208      GGTGTCTTGTTCGGCGGTTTTGCGGCTAACGGCGCGCTTGCCGGGCTTTCGTGCGCGTATACGTCTAACACGGCTACGCATTCGAATGCGCGTATCGGCTCTCGGCTTTGCT 
Template:  SRS017701_Baylor_scaffold_11281 strand: + 46791-46865 ref: 46753-46865
Variable:  SRS017701_Baylor_scaffold_11281 strand: + 11155-11229 alnlen 74 mutations 10 involve-A 10 involve-T 0

46791      TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::: ::::  :::::::::: ::::::::  :::: :::::::::::::::::: ::: : ::
11155      TGCCGGGCTTTCGTGCGCGGCTACGAATAACGCGGCTACGTCTACGCATGCGAATATCGGCTCTCGGCTTTGCT 
Template:  SRS017701_Baylor_scaffold_11281 strand: + 46789-46865 ref: 46753-46865
Variable:  SRS017701_Baylor_scaffold_11281 strand: + 8225-8301 alnlen 76 mutations 13 involve-A 13 involve-T 0

46789      AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::: ::::  :::: ::: : :::::::: ::::: ::::: :: ::::::::: ::: : ::
8225       AATGCCGGGCTTTCGTGCGCGTTTACGTATACCGCGGCTACGTATACGTATGCGTATTTCGGCTCTCGGCTTTGCT