Template:  SRS024075_LANL_scaffold_1103 strand: + 12492-12565 ref: 12492-12565
Variable:  SRS024075_LANL_scaffold_1103 strand: + 11983-12056 alnlen 73 mutations 10 involve-A 7 involve-T 1

12492      CGTTGTTCTTCCGTCCGGCAACATCAACAACAACAATTGCAACAACAGCAACGGTGTTCGCCCATTCTGTGTC 
           :::::::::::::::::::::: :::::::: ::::::::: :  :::: :::::::::::::  : ::: ::
11983      CGTTGTTCTTCCGTCCGGCAACTTCAACAACTACAATTGCAGCGGCAGCCACGGTGTTCGCCCGGTTTGTATC 
Template:  SRS024075_LANL_scaffold_1103 strand: + 12492-12565 ref: 12492-12565
Variable:  SRS024075_LANL_scaffold_1103 strand: + 11298-11371 alnlen 73 mutations 13 involve-A 10 involve-T 1

12492      CGTTGTTCTTCCGTCCGGCAACATCAACAACAACAATTGCAACAACAGCAACGGTGTTCGCCCATTCTGTGTC 
           ::::::::::::::::::: :::::  :::: ::: ::::  : :::::  ::::::::::::: : ::: ::
11298      CGTTGTTCTTCCGTCCGGCTACATCGGCAACTACAGTTGCGGCTACAGCTTCGGTGTTCGCCCAGTTTGTATC