Template:  SRS024435_LANL_scaffold_33181 strand: + 7968-8096 ref: 7968-8096
Variable:  SRS024435_LANL_scaffold_33181 strand: + 7092-7220 alnlen 128 mutations 17 involve-A 17 involve-T 0

7968       GTTTTGGTCGTCCTCGGAGAACTCCGGCAACAACGCCCGGAACTGGAACGTGAACTCCGATGGCAACGTGAACTGCAACTGGAACAATAAGAACATCAACAACGACGTGCGACCTGTTCTAGCTTTTT 
           ::::::::::::::::::: :::::::: :: :::::::: :::::  :::: ::::::::::: :::::: ::::  :::::::  ::::::: ::  :: ::::::::::::::::::::::::::
7092       GTTTTGGTCGTCCTCGGAGTACTCCGGCTACGACGCCCGGTACTGGGGCGTGTACTCCGATGGCGACGTGAGCTGCCGCTGGAACGGTAAGAACGTCTTCAGCGACGTGCGACCTGTTCTAGCTTTTT 
Template:  SRS024435_LANL_scaffold_33181 strand: + 7968-8096 ref: 7968-8096
Variable:  SRS024435_LANL_scaffold_33181 strand: + 5302-5430 alnlen 128 mutations 19 involve-A 18 involve-T 0

7968       GTTTTGGTCGTCCTCGGAGAACTCCGGCAACAACGCCCGGAACTGGAACGTGAACTCCGATGGCAACGTGAACTGCAACTGGAACAATAAGAACATCAACAACGACGTGCGACCTGTTCTAGCTTTTT 
           :::::::::::::::::::  ::::::: :: :::::::: ::::: :::::  ::::: :::: ::::: ::::  ::::: ::: :::: :: ::::: ::: :::::::::::::::::::::::
5302       GTTTTGGTCGTCCTCGGAGCGCTCCGGCGACTACGCCCGGTACTGGGACGTGTGCTCCGGTGGCTACGTGGACTGACACTGGTACAGTAAGGACTTCAACGACGTCGTGCGACCTGTTCTAGCTTTTT