Template: SRS024435_LANL_scaffold_33181 strand: + 7968-8096 ref: 7968-8096 Variable: SRS024435_LANL_scaffold_33181 strand: + 7092-7220 alnlen 128 mutations 17 involve-A 17 involve-T 0 7968 GTTTTGGTCGTCCTCGGAGAACTCCGGCAACAACGCCCGGAACTGGAACGTGAACTCCGATGGCAACGTGAACTGCAACTGGAACAATAAGAACATCAACAACGACGTGCGACCTGTTCTAGCTTTTT ::::::::::::::::::: :::::::: :: :::::::: ::::: :::: ::::::::::: :::::: :::: ::::::: ::::::: :: :: :::::::::::::::::::::::::: 7092 GTTTTGGTCGTCCTCGGAGTACTCCGGCTACGACGCCCGGTACTGGGGCGTGTACTCCGATGGCGACGTGAGCTGCCGCTGGAACGGTAAGAACGTCTTCAGCGACGTGCGACCTGTTCTAGCTTTTT Template: SRS024435_LANL_scaffold_33181 strand: + 7968-8096 ref: 7968-8096 Variable: SRS024435_LANL_scaffold_33181 strand: + 5302-5430 alnlen 128 mutations 19 involve-A 18 involve-T 0 7968 GTTTTGGTCGTCCTCGGAGAACTCCGGCAACAACGCCCGGAACTGGAACGTGAACTCCGATGGCAACGTGAACTGCAACTGGAACAATAAGAACATCAACAACGACGTGCGACCTGTTCTAGCTTTTT ::::::::::::::::::: ::::::: :: :::::::: ::::: ::::: ::::: :::: ::::: :::: ::::: ::: :::: :: ::::: ::: ::::::::::::::::::::::: 5302 GTTTTGGTCGTCCTCGGAGCGCTCCGGCGACTACGCCCGGTACTGGGACGTGTGCTCCGGTGGCTACGTGGACTGACACTGGTACAGTAAGGACTTCAACGACGTCGTGCGACCTGTTCTAGCTTTTT