Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS043411_WUGC_scaffold_18861 strand: + 13245-13335 ref: 13245-13335

Variable:  SRS043411_WUGC_scaffold_18861 strand: + 12488-12578 alnlen 90 mutations 13 involve-A 13 involve-T 0

CTTCCAGCAGTTGGAACGTGAACTTCAACAACGGCAACGTCAACACGAACAACCGCCAGAACGCGAACCGGGTTCGTCCCCTCGCCGCAA (Template)
CTTCCAGCAGTTGGAGCGTGGGCTTCAACTTCGGCGGCGTCCTCACGCACTACCGCCAGAGCGCGTACCGGGTTCGTCCCCTCGCCGCAA (Variable)