Template:  SRS043701_LANL_scaffold_20843 strand: + 49153-49274 ref: 49153-49274
Variable:  SRS043701_LANL_scaffold_20843 strand: + 48785-48906 alnlen 121 mutations 14 involve-A 14 involve-T 0

49153      TTTGCAGGTTCGGGCTGCTGGCAGGCACGCGAACAATGGCACGAACGCAGGTGCGTCCAACACGAATGCGAACAACACAGCTGCGAATGCGAACGCGAATTACTCGTCGCCCCTATACTTT 
           ::::: :::::::::::::::: ::::::::  ::::::::::::::: :::::::::: :::: ::::: :: :::: :::::::::::: ::::::::: :::::::::::: : ::::
48785      TTTGCGGGTTCGGGCTGCTGGCGGGCACGCGCTCAATGGCACGAACGCGGGTGCGTCCAGCACGGATGCGTACTACACGGCTGCGAATGCGCACGCGAATTGCTCGTCGCCCCTCTGCTTT