Template:  SRS045715_LANL_scaffold_24840 strand: - 1529-1714 ref: 1528-1715
Variable:  SRS045715_LANL_scaffold_24840 strand: - 3337-3522 alnlen 185 mutations 10 involve-A 10 involve-T 0

1714       TCCTGCTTCGGGTTTCCGCAACAACAGCGATGGGTCGTTGAACAATGTTGGGAACAACGGTTACTATTGGTCGGCAGTTCCGAACAACACGAACAACGGTTGCAACCTGAACTTCAACTGGAGCAACGTGAACCCTCAGAACAACAACAACCGTTCGTACGGGTTTGCGGCACGGCCAGTCTCAG (revcomp)
           :::::::::::::::::::::: :::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::::  :::::::::: :::::::: ::::::::::: ::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::::::::::::::
3522       TCCTGCTTCGGGTTTCCGCAACTACAGCGATGGGTCGTTGAACGATGTTGGGAACTACGGTTACTATTGGTCGGCAGTTCCGCTCAACACGAACTACGGTTGCTACCTGAACTTCTACTGGAGCAACGTGAACCCTCAGTACAACTACAACCGTTCGTACGGGTTTGCGGCACGGCCAGTCTCAG (revcomp)