Template: SRS050299_LANL_scaffold_687 strand: + 17038-17150 ref: 17038-17150 Variable: SRS050299_LANL_scaffold_687 strand: + 16493-16605 alnlen 112 mutations 22 involve-A 22 involve-T 0 17038 GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT ::::::::::::::::::::::::: : : ::::: :::::::::::::: :::: :::: : :: ::::: ::: :::: :::: :: ::::::::: ::: : :: 16493 GGTGTCTTGTTCGGCGGTAATGCGACTTGCGGCGCGTCTGCCGGGCTTTCGTTCGCGGCTACGTCTTACGCGGCTGCGAGTACGGCTGCGCATTTCGGCTCTCGGCTTTGCT