Template: SRS050422_LANL_scaffold_50 strand: + 751-878 ref: 751-878 Variable: SRS050422_LANL_scaffold_50 strand: + 4-131 alnlen 127 mutations 17 involve-A 17 involve-T 0 751 ACTGGTCCTCCTCGGAGTTCTACAACAATCCGGCGAACAACGCTCTTTATGTGAATGTGAACAACGGCAACGTGAACAACAACAATAAGAACAACAGAAATAGTTACGTGCGTCCGGTCTTGGCTTT ::::::::::::::::::::: : :: :::::::: : :::::::::::::: ::::: : :::::::::: ::::: ::: :::: :: :::: ::::::::::::::::::::::::::::: 4 ACTGGTCCTCCTCGGAGTTCTGCGACCTTCCGGCGAGCGGCGCTCTTTATGTGAGTGTGAGCGGCGGCAACGTGTACAACTACAGTAAGGACGACAGGAATAGTTACGTGCGTCCGGTCTTGGCTTT