Template:  SRS050422_LANL_scaffold_95410 strand: + 2780-2899 ref: 2780-2899
Variable:  SRS050422_LANL_scaffold_95410 strand: + 2234-2353 alnlen 119 mutations 24 involve-A 24 involve-T 0

2780       GCGAGGTGTCCTCTTCGGCGGTAATGCGAATAACAGCTCGAATGCCGGGTTTTCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCGGGTCTCGCCAATGATTTT 
           ::: ::::::::::::::::::  :::: ::  : :::::  :::::::::::::: ::::  ::::  : :: ::::::::  ::::  ::::: ::::::::::::::  :: ::::
2234       GCGGGGTGTCCTCTTCGGCGGTTGTGCGTATGGCGGCTCGGCTGCCGGGTTTTCGTCTGCGGGTTCGCGTTACGCGCCCTCGGTTACGTCTGCGACTATCGGGTCTCGCCTTTGCTTTT