Template:  SRS050752_LANL_scaffold_24509 strand: + 2572-2699 ref: 2572-2699
Variable:  SRS050752_LANL_scaffold_24509 strand: + 1703-1830 alnlen 127 mutations 24 involve-A 24 involve-T 0

2572       TTCCACTGCTTGGTGGTGGGAGCGTTCTCCTAATTACAACAACAGCAACAACTTCTGCAATGTGAACACGAACGGCAACGCGAACAATAACAACGCAAGGAATTCCAATGGCGTCGCCCCGGATTTC 
           :::::::::::::::::::::::::::::::  :: :  ::::::: ::  ::::::: :::::: : ::::::::  :::: ::  :  : ::::::::  ::::  :::::::::::::: ::::
1703       TTCCACTGCTTGGTGGTGGGAGCGTTCTCCTTGTTGCGGCAACAGCTACGCCTTCTGCTATGTGAGCCCGAACGGCGCCGCGGACCTTGGCTACGCAAGGCTTTCCTTTGGCGTCGCCCCGGCTTTC