Template: SRS050925_LANL_scaffold_32081 strand: + 346-474 ref: 346-474 Variable: SRS050925_LANL_scaffold_32081 strand: + 112-240 alnlen 128 mutations 18 involve-A 18 involve-T 0 346 CGCGAACGTCAACGGCTCTGTCCTTGCCGTCGGTGGGAATTGGAACAACACGACGAACGCGGGCTTGTGGAATTGGAACGGTAATTACGATCCGTCGAACACGAACTCGAACATCGGGGGTCGCATTT :::: :::: :::::::::::::::::::::::::: ::::: :: :::: ::: ::::::::::::: ::::: ::::: :::::::::::::: ::::: :::: ::::::::::::: ::: 112 CGCGGTCGTCTACGGCTCTGTCCTTGCCGTCGGTGGGTATTGGGACGTCACGTCGAGCGCGGGCTTGTGGTATTGGTACGGTTTTTACGATCCGTCGATCACGAGCTCGCTCATCGGGGGTCGCCTTT