Template:  SRS050925_LANL_scaffold_5503 strand: - 9241-9352 ref: 9238-9353
Variable:  SRS050925_LANL_scaffold_5503 strand: - 9584-9695 alnlen 111 mutations 13 involve-A 13 involve-T 0

9352       TTGCCCTGTTCGGTGGCAACCGTGGCAACGGGTCGAAGTGCGGTTTGTCGTACTGGAATGTGAACAACCCTGCGACGAACGTGAACACGAACATCGTGGCGAGCCAATCTT (revcomp)
           :::::::::::::::::  ::::::: :::::::::::::::::::::::: ::::  ::::::: :::::::::::  ::::::::::  ::::::::::::::  ::::
9695       TTGCCCTGTTCGGTGGCGCCCGTGGCTACGGGTCGAAGTGCGGTTTGTCGTCCTGGTCTGTGAACGACCCTGCGACGCGCGTGAACACGGGCATCGTGGCGAGCCTTTCTT (revcomp)