Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS050925_LANL_scaffold_63133 strand: - 4247-4346 ref: 4248-4347

Variable:  SRS050925_LANL_scaffold_63133 strand: - 4514-4613 alnlen 99 mutations 14 involve-A 14 involve-T 0

GTTGGTCGGCGGCGACTGCAATAATGGTTTTCTTGTTGGGGCTTCGGCGCTGAATCTGAACAATCTTGTGTCGAATACGAACTGGAACATCGGGGCTGC (Template)
GTTGGTCGGCGGCGCCTGCGATGCTGGTTTTCTTGTTGGGGCTTCGGCGCTGCGTCTGAACTCTCTTGTGTCGGCTACGTACTGGGGCTTCGGGGCTGC (Variable)