Template:  SRS052027_LANL_scaffold_10277 strand: - 14481-14595 ref: 14482-14596
Variable:  SRS052027_LANL_scaffold_10277 strand: - 14674-14788 alnlen 114 mutations 14 involve-A 14 involve-T 0

14595      GGGGTGTGTTGTTCAGCGGTTCTTCGAATAATGGTGCGAATGCAGGTGTCAGCTACTCGAATACGAATAATACGGCGTCGAATACGAATGCGAATATCGGTTCTCAGCTATGCT (revcomp)
           :::::::::::::: ::::::::::: :: ::::::::::::: :::::: ::::::::::::::: :::: :::::::: :::::  :::: :: ::::::::: ::: ::::
14788      GGGGTGTGTTGTTCGGCGGTTCTTCGCATTATGGTGCGAATGCGGGTGTCGGCTACTCGAATACGAGTAATGCGGCGTCGTATACGTCTGCGCATGTCGGTTCTCGGCTTTGCT (revcomp)
Template:  SRS052027_LANL_scaffold_10277 strand: - 14481-14555 ref: 14482-14596
Variable:  SRS052027_LANL_scaffold_10277 strand: - 52160-52234 alnlen 74 mutations 15 involve-A 15 involve-T 0

14555      TGCAGGTGTCAGCTACTCGAATACGAATAATACGGCGTCGAATACGAATGCGAATATCGGTTCTCAGCTATGCT (revcomp)
           ::: :::::: ::: :::: :: ::: : :: ::::::::  ::::  ::::::: ::::::::: ::: ::::
52234      TGCGGGTGTCGGCTGCTCGTATGCGAGTCATGCGGCGTCGTCTACGGCTGCGAATTTCGGTTCTCGGCTTTGCT (revcomp)