Template:  SRS052697_LANL_scaffold_46101 strand: + 20681-20788 ref: 20679-20788
Variable:  SRS052697_LANL_scaffold_46101 strand: + 20398-20505 alnlen 107 mutations 17 involve-A 15 involve-T 0

20681      GTGTTTACTTTGGTGGTAAGTCGTACGACGACAATTGTTCTCTGCGGGATGGTCATTTGCACCATGTTCCTTCGAACGCGCGCTCGAGCATCGGTGGCAGCTAACGT 
           :::::: ::::::::::: :::::::: ::::  :::::::::::::: ::::::::::: :  ::::::::::  :::: ::::: :: :::::::: :::  :::
20398      GTGTTTTCTTTGGTGGTAGGTCGTACGGCGACTTTTGTTCTCTGCGGGGTGGTCATTTGCTCTTTGTTCCTTCGGGCGCGGGCTCGGGCTTCGGTGGCGGCTTTCGT