Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS052697_LANL_scaffold_46101 strand: + 20681-20788 ref: 20679-20788

Variable:  SRS052697_LANL_scaffold_46101 strand: + 20398-20505 alnlen 107 mutations 17 involve-A 15 involve-T 0

GTGTTTACTTTGGTGGTAAGTCGTACGACGACAATTGTTCTCTGCGGGATGGTCATTTGCACCATGTTCCTTCGAACGCGCGCTCGAGCATCGGTGGCAGCTAACGT (Template)
GTGTTTTCTTTGGTGGTAGGTCGTACGGCGACTTTTGTTCTCTGCGGGGTGGTCATTTGCTCTTTGTTCCTTCGGGCGCGGGCTCGGGCTTCGGTGGCGGCTTTCGT (Variable)