Template:  SRS054956_LANL_scaffold_15399 strand: + 45938-46051 ref: 45938-46051
Variable:  SRS054956_LANL_scaffold_15399 strand: + 45680-45793 alnlen 113 mutations 17 involve-A 16 involve-T 1

45938      CTGGTGATCTCTGGCGGTAACGTGAACAACGGTACGAATGCCGGGCCTTTCTACCGGAACTGTAACAACGGTACGGGTAATACGAACTGGAACATCGGCGGTCGCCCACTTTG 
           :::::: :::::::::::  :::::::: :::: ::  ::::::::::::::::::: :::::  : :::::::::::  ::::::::::: : ::::::::::::: : :::
45680      CTGGTGTTCTCTGGCGGTGTCGTGAACAGCGGTGCGGGTGCCGGGCCTTTCTACCGGCACTGTGGCCACGGTACGGGTGTTACGAACTGGAGCGTCGGCGGTCGCCCTCATTG