Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS054956_LANL_scaffold_15399 strand: + 45938-46051 ref: 45938-46051

Variable:  SRS054956_LANL_scaffold_15399 strand: + 45680-45793 alnlen 113 mutations 17 involve-A 16 involve-T 1

CTGGTGATCTCTGGCGGTAACGTGAACAACGGTACGAATGCCGGGCCTTTCTACCGGAACTGTAACAACGGTACGGGTAATACGAACTGGAACATCGGCGGTCGCCCACTTTG (Template)
CTGGTGTTCTCTGGCGGTGTCGTGAACAGCGGTGCGGGTGCCGGGCCTTTCTACCGGCACTGTGGCCACGGTACGGGTGTTACGAACTGGAGCGTCGGCGGTCGCCCTCATTG (Variable)