Template:  SRS056259_LANL_scaffold_48800 strand: - 8258-8346 ref: 8259-8347
Variable:  SRS056259_LANL_scaffold_48800 strand: - 8807-8895 alnlen 88 mutations 15 involve-A 15 involve-T 0

8346       GGCTATAGCGCTAACAATGTTCAGTATGTCAATGACGATGGCAACGTCAACTACAACTGGTGTAGCAATGATTTTGGCGTGCGTCCGT (revcomp)
           :::: ::::::: ::  ::::: :: :::::::: :: ::::  ::::: :: :: ::::::: ::: ::::::::::::::::::::
8895       GGCTGTAGCGCTGACGGTGTTCGGTTTGTCAATGGCGGTGGCGGCGTCAGCTGCAGCTGGTGTGGCAGTGATTTTGGCGTGCGTCCGT (revcomp)
Template:  SRS056259_LANL_scaffold_48800 strand: - 8258-8346 ref: 8259-8347
Variable:  SRS056259_LANL_scaffold_48800 strand: - 41238-41326 alnlen 88 mutations 17 involve-A 17 involve-T 0

8346       GGCTATAGCGCTAACAATGTTCAGTATGTCAATGACGATGGCAACGTCAACTACAACTGGTGTAGCAATGATTTTGGCGTGCGTCCGT (revcomp)
           :::: : :::::  : ::::::::: ::::  :: :: ::::  ::::  :::: :::::::: ::: ::::::::::::::::::::
41326      GGCTGTGGCGCTGGCGATGTTCAGTGTGTCTTTGGCGGTGGCCGCGTCGGCTACGACTGGTGTGGCAGTGATTTTGGCGTGCGTCCGT (revcomp)