Template:  SRS057539_LANL_scaffold_61511 strand: + 3870-4028 ref: 3864-4028
Variable:  SRS057539_LANL_scaffold_61511 strand: + 2062-2220 alnlen 158 mutations 20 involve-A 20 involve-T 0

3870       TCCTGCTTCGGGTTTCCGCAACAACAGCGATGGGTCGTTGAACAATGTTGGGAACAACGGTTACTATTGGTCGGCAGTTCCGAACAACACGAACAACGGTTGCAACCTGAACTTCAACTGGAGCAACGTGAACCCTCAGAACAACAACAACCGTTCGT 
           ::::::::::::::::::: :: :::::::::::::::::  :::::::::: :: ::::::::: ::::::::::::::::: ::::::: :: ::::::::  :::: :::::  :::::::  ::::::::::::: ::::::::  ::::::::
2062       TCCTGCTTCGGGTTTCCGCTACTACAGCGATGGGTCGTTGGGCAATGTTGGGTACTACGGTTACTTTTGGTCGGCAGTTCCGAGCAACACGTACGACGGTTGCTTCCTGTACTTCGTCTGGAGCGGCGTGAACCCTCAGTACAACAACTGCCGTTCGT