Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS058770_LANL_scaffold_24560 strand: + 265-378 ref: 265-378

Variable:  SRS058770_LANL_scaffold_24560 strand: + 6-119 alnlen 113 mutations 17 involve-A 16 involve-T 1

CTGGTGATCTCTGGCGCTAACGTGAACAACGGTACGAATGCCGGACCTTTCTACCGGAACTGTAACAACGGTACGGGTAATCTGAACTGGAACATCGGCGGTCGCCCACTTTG (Template)
CTGGTGGTCTCTGGCGCTTACGTGGACCGCGGTGCGAATGCCGGACCTTTCTACCGGTACTGTTTCTACGGTGCGGGTGCTCTGTACTGGCACATCGGCGGTCGCCCTCATTG (Variable)