Template:  SRS063985_LANL_scaffold_8871 strand: - 5091-5201 ref: 5092-5202
Variable:  SRS063985_LANL_scaffold_8871 strand: - 5350-5460 alnlen 110 mutations 12 involve-A 12 involve-T 0

5201       TAGCGTTTGCTGGGGGTAATTTCAACAATGGTGCTAATGATGGGTTCTTTTACTTGAATTTGAACAATGGTTCCGGCAATTCGAACTGGAATTACGGGGCTCGCCTACTT (revcomp)
           ::::::::::::::::: :::::  : ::::::::  :: ::::::::::: ::::: ::::::::::::::::::::::::: :::::: ::::::::::::::: :::
5460       TAGCGTTTGCTGGGGGTTATTTCCTCTATGGTGCTGGTGTTGGGTTCTTTTGCTTGACTTTGAACAATGGTTCCGGCAATTCGTACTGGAGTTACGGGGCTCGCCTTCTT (revcomp)