Template: SRS064276_LANL_scaffold_12382 strand: + 41598-41715 ref: 41598-41715 Variable: SRS064276_LANL_scaffold_12382 strand: + 40877-40994 alnlen 117 mutations 11 involve-A 11 involve-T 0 41598 CGGTGCCTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTTTT ::::::::::::::::::::: :::: :::::::::: :::::::::::::: :::::: ::::: ::::::::::::: ::::: :::::::::::::::::::::::::::: 40877 CGGTGCCTGATTCGCGGTGGCGGCTGGCCCAATGGCGGCGACGCTGGGGTGTTCGATTCCAGCCTGAGCAACCCGCGCTCCTATGCCTGCGGCAACATCGGGGGCCGTTCCGCTTTT Template: SRS064276_LANL_scaffold_12382 strand: + 41604-41713 ref: 41598-41715 Variable: SRS064276_LANL_scaffold_12382 strand: + 2580-2689 alnlen 109 mutations 11 involve-A 11 involve-T 0 41604 CTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTT ::::::::::::::::::::: : ::::::: ::::::::::::: ::::: :::::: ::::::::::::::::::: ::::: ::::::::::::::::::::: 2580 CTGATTCGCGGTGGCAACTGGGCCGTTGGCGGCCGCGCTGGGGTGTTCCATTCCTACCTGAGCAACCCGCGCTCCAATGCCTACGGCGACATCGGGGGCCGTTCCGCTT Template: SRS064276_LANL_scaffold_12382 strand: + 41621-41705 ref: 41598-41715 Variable: SRS064276_LANL_scaffold_12382 strand: + 2699-2783 alnlen 84 mutations 14 involve-A 14 involve-T 0 41621 CTGGAACAATGGCGGCAACGCTGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCG :::: :::::::::: ::::::::::::: ::::: :::: :: :::::::::: ::::: ::::: :: :::::::::: 2699 CTGGGGCAATGGCGGCGGCGCTGGGGTGTTCTATTCCGGCCTGGGCAGCCCGCGCTCCTATGCCTACGGCGACGTCGGGGGCCG