Template:  SRS077730_LANL_scaffold_13015 strand: + 13696-13864 ref: 13696-13863
Variable:  SRS077730_LANL_scaffold_13015 strand: + 12276-12444 alnlen 168 mutations 18 involve-A 16 involve-T 1

13696      TCCCTGCGTCGGGGTATCGCAACTATTCCAATGGCGGGGCGAACAACGTTGGCAGCTACGGCTACTGTTGGTCGGTGGTTCCGAACAACCAGAACAACGGTCGCAACCTGAACTTCAACTCGTCGAACGTGAACCCGTTGAACAACAACAATCGGGCGTACGGGTTTG 
           ::::::::::::::: :::: :::::::: :::::::::::  :: ::::::::::::::::::::::::::::: :::::::: :: :::: :: ::: :::::::::::::::::::::::::  :::::::::::::::::::  :: :::::::: ::::::::
12276      TCCCTGCGTCGGGGTTTCGCGACTATTCCTATGGCGGGGCGCTCATCGTTGGCAGCTACGGCTACTGTTGGTCGGCGGTTCCGAGCATCCAGTACTACGCTCGCAACCTGAACTTCAACTCGTCGTTCGTGAACCCGTTGAACAACTCCAGTCGGGCGTGCGGGTTTG