Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS077730_LANL_scaffold_13015 strand: + 13696-13864 ref: 13696-13863

Variable:  SRS077730_LANL_scaffold_13015 strand: + 12276-12444 alnlen 168 mutations 18 involve-A 16 involve-T 1

TCCCTGCGTCGGGGTATCGCAACTATTCCAATGGCGGGGCGAACAACGTTGGCAGCTACGGCTACTGTTGGTCGGTGGTTCCGAACAACCAGAACAACGGTCGCAACCTGAACTTCAACTCGTCGAACGTGAACCCGTTGAACAACAACAATCGGGCGTACGGGTTTG (Template)
TCCCTGCGTCGGGGTTTCGCGACTATTCCTATGGCGGGGCGCTCATCGTTGGCAGCTACGGCTACTGTTGGTCGGCGGTTCCGAGCATCCAGTACTACGCTCGCAACCTGAACTTCAACTCGTCGTTCGTGAACCCGTTGAACAACTCCAGTCGGGCGTGCGGGTTTG (Variable)