Template:  SRS077730_LANL_scaffold_24820 strand: + 266-379 ref: 266-379
Variable:  SRS077730_LANL_scaffold_24820 strand: + 7-120 alnlen 113 mutations 12 involve-A 11 involve-T 1

266        CTGGTGATCTCTGGCGGTAACGTGAACAACGGTACGAATGCCGGGCCTTTCTACCGGAACTGTAACAACGGTACGGGTAATACGAACTGGAACATCGGCGGTCGCCCACTTTG 
           :::::: ::::::::::: ::::::::::::::::: ::::::::::::::: :::: :::::  ::::::::::::: ::::: ::::: :::::::::::::::: : :::
7          CTGGTGCTCTCTGGCGGTGACGTGAACAACGGTACGGATGCCGGGCCTTTCTCCCGGCACTGTCGCAACGGTACGGGTCATACGTACTGGCACATCGGCGGTCGCCCTCATTG