Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS077730_LANL_scaffold_24820 strand: + 266-379 ref: 266-379

Variable:  SRS077730_LANL_scaffold_24820 strand: + 7-120 alnlen 113 mutations 12 involve-A 11 involve-T 1

CTGGTGATCTCTGGCGGTAACGTGAACAACGGTACGAATGCCGGGCCTTTCTACCGGAACTGTAACAACGGTACGGGTAATACGAACTGGAACATCGGCGGTCGCCCACTTTG (Template)
CTGGTGCTCTCTGGCGGTGACGTGAACAACGGTACGGATGCCGGGCCTTTCTCCCGGCACTGTCGCAACGGTACGGGTCATACGTACTGGCACATCGGCGGTCGCCCTCATTG (Variable)