Template:  JQ680349.1 strand: - 39454-39573 ref: 39449-39574
Variable:  JQ680349.1 strand: - 40225-40344 alnlen 119 mutations 18 involve-A 17 involve-T 0

39573      GGTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGGGCGGTTGCAGCACTT (revcomp)
           ::::::::::::::::::::  ::::::::::  :::::::  ::::  :::::::::::::::::::  ::::  :: ::::: : :::::: : :::::::::::::::::::: ::
40344      GGTACTGGAGTAGCAGTGAGGGCAGTCAGAACGGCAGCTGGCTCGTGGGCTTTAGTAATGGCAACTTCGGCAACCTCAGCAAGTGCTACAGTACCGTGGTGAGGGCGGTTGCAGCATTT (revcomp)