Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680349.1 strand: - 39454-39573 ref: 39449-39574

Variable:  JQ680349.1 strand: - 40225-40344 alnlen 119 mutations 18 involve-A 17 involve-T 0

GGTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGGGCGGTTGCAGCACTT (Template)
GGTACTGGAGTAGCAGTGAGGGCAGTCAGAACGGCAGCTGGCTCGTGGGCTTTAGTAATGGCAACTTCGGCAACCTCAGCAAGTGCTACAGTACCGTGGTGAGGGCGGTTGCAGCATTT (Variable)