Template:  JQ680358.1 strand: + 5598-5725 ref: 5598-5725
Variable:  JQ680358.1 strand: + 4971-5098 alnlen 127 mutations 11 involve-A 11 involve-T 0

5598       TGGCTTGCACGCCCTCATTGGCGGCGGCAACTGGAACAACGGCGTGCATTGCGGCTCCCGGACGGTGAATTGCAACAATTACCCGTGGAACGTGAACACGAACATTGGCGTGTGGTGCGTGTGTGAC 
           ::::::::::::::::::::::::::::  :::::::  :::::::: :::::::::::::::::::  ::::::: ::: ::::::::::::::::::: :: :::::::::::::::::::::::
4971       TGGCTTGCACGCCCTCATTGGCGGCGGCGGCTGGAACGGCGGCGTGCGTTGCGGCTCCCGGACGGTGGGTTGCAACTATTGCCCGTGGAACGTGAACACGTACGTTGGCGTGTGGTGCGTGTGTGAC