Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680361.1 strand: - 21695-21806 ref: 21692-21807

Variable:  JQ680361.1 strand: - 22037-22148 alnlen 111 mutations 12 involve-A 11 involve-T 1

TTGCCCTGTTCGGTGGCAACCGTGGCAACGGGTCGAAGTGCGGTTTGTCGTACTGGAATGTGAACAACCCTGCGACGAACGTGAACACGAACATCGTGGCGAGCCAATCTT (Template)
TTGCCCTGTTCGGTGGCCTCCGTGGCGACGGGTCGAAGTGCGGTTTGTCGGACTGGTATGTGGTCAACCCTGCGACGGCCGTGAGCACGAACATCGTGGCGAGCCTTTCTT (Variable)