Template:  JQ680367.1 strand: + 42437-42559 ref: 42437-42559
Variable:  JQ680367.1 strand: + 41651-41773 alnlen 122 mutations 11 involve-A 9 involve-T 1

42437      TTCTAACTGGTGGCTGCGGTCGCCTGAGGCGTCGTCGTCTTCGTCTTTCGCCAATGTGAACAACAACGGTAACAGCAACAACAACAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTCCT 
           :::: :::::::::::::::::::::::::::::::: ::::::::::::::: ::::  ::::: ::::  ::::::::::  ::::::::::::::::::::::::::::::::::: ::
41651      TTCTTACTGGTGGCTGCGGTCGCCTGAGGCGTCGTCGACTTCGTCTTTCGCCATTGTGTTCAACAGCGGTTCCAGCAACAACGGCAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTTCT 
Template:  JQ680367.1 strand: + 42444-42559 ref: 42437-42559
Variable:  JQ680367.1 strand: + 7211-7326 alnlen 115 mutations 16 involve-A 15 involve-T 0

42444      TGGTGGCTGCGGTCGCCTGAGGCGTCGTCGTCTTCGTCTTTCGCCAATGTGAACAACAACGGTAACAGCAACAACAACAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTCCT 
           ::::::::::::::::::: :::::::::::::::::::::::::: ::::  :  :::::::  ::::: :: :  : ::::::::  ::::::::::::::::::::::: ::
7211       TGGTGGCTGCGGTCGCCTGGGGCGTCGTCGTCTTCGTCTTTCGCCACTGTGTCCGGCAACGGTGGCAGCACCACCGGCTACGCGTCCGGCTCCTACGGGGTGGCGTTCGGCTTCT