Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680367.1 strand: + 42437-42559 ref: 42437-42559

Variable:  JQ680367.1 strand: + 41651-41773 alnlen 122 mutations 11 involve-A 9 involve-T 1

TTCTAACTGGTGGCTGCGGTCGCCTGAGGCGTCGTCGTCTTCGTCTTTCGCCAATGTGAACAACAACGGTAACAGCAACAACAACAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTCCT (Template)
TTCTTACTGGTGGCTGCGGTCGCCTGAGGCGTCGTCGACTTCGTCTTTCGCCATTGTGTTCAACAGCGGTTCCAGCAACAACGGCAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTTCT (Variable)
Template:  JQ680367.1 strand: + 42444-42559 ref: 42437-42559

Variable:  JQ680367.1 strand: + 7211-7326 alnlen 115 mutations 16 involve-A 15 involve-T 0

TGGTGGCTGCGGTCGCCTGAGGCGTCGTCGTCTTCGTCTTTCGCCAATGTGAACAACAACGGTAACAGCAACAACAACAACGCGTCCAACTCCTACGGGGTGGCGTTCGGCTCCT (Template)
TGGTGGCTGCGGTCGCCTGGGGCGTCGTCGTCTTCGTCTTTCGCCACTGTGTCCGGCAACGGTGGCAGCACCACCGGCTACGCGTCCGGCTCCTACGGGGTGGCGTTCGGCTTCT (Variable)